What's new

13th February 2025: Installed PPanGGOLiN to version 2.2.1 in Section Genome Annotations.
07th February 2024: Installed FastANI to version 1.3 in Section Genome Annotations.
07th February 2024: Updated IceScreen to version 1.3.1 in Section Genome Annotations.
8th June 2023: Updated FROGS to version 4.1.0. Details on changes here.
7th June 2023: Added Breseq in Section Variant Analysis.
5th May 2023: Added NCBI Datasets in Section Get Data.
3rd May 2023: Updated IceScreen to version 1.2.0 in Section Genome Annotations.
17th January 2023:Updated FROGS to version 4.0.1 in Section Metagenomics. New tools (PICRUSt2) added and new features. More details here.
17th January 2023: Galaxy updated to version 22.05. More info on Migale website.
16 December 2022: Updated IceScreen to version 1.1.0 in Section Genome Annotations.
7th March 2022: Added LoFreq in Section Variant Analyses.
7th March 2022: Added "Collapse Collections", "Column Joins" in Section Collections Operations.
7th December 2021: Updated FROGS to version 3.2.3+galaxy2 in Section Metagenomics.
10th July 2021: Added Shasta in Section Assembly.
20th April 2021: Added Nanofilt in Section nanopore.
14th April 2021: Added FROGS 3.2 in Section Metagenomics.
5th March 2021: Added Heatmap2 with gplots in Section Visualization.
28th January 2021: Added Parnsnp in Section Phylogenyy.
28th January 2021: Added ECTyper in Section Genome Annotation.
14th January 2021: Added Filter SPAdes Output in Section Assembly.
27th November 2020: Added Seqtk in Section FAST/FASTQ Manipulation.
27th November 2020: Added SeqSero in Section Genome Annotation.
23rd November 2020: Added staramr in Section Genome Annotation.
2nd October 2020: Added Shovill in Section Assembly.
27th July 2020: Added Progressive Mauve in Section Multiple Alignements.
27th July 2020: Added Mummer4 in Section Multiple Alignements.
24th July 2020: Added NCBI accession Download in Section Get Data.
24th July 2020: Added Genbank to GFF3 in Section Convert Formats.
22nd July 2020: Added dRep in Section Assembly Annotation.
22nd July 2020: Added Roary in Section Assembly Annotation.
10th July 2020: Added Miniasm in Section Assembly.
10th July 2020: Added Flye in Section Assembly.
10th July 2020: Added Canu in Section Assembly.
10th July 2020: Added Minimap2 in Section Mapping.
10th July 2020: Added Diamond in Section NCBI Blast.
10th July 2020: Added Nanoplot in Section Nanopore.
10th July 2020: Added Porechop in Section Nanopore.
3rd July 2020: Added NCBI Blast+ tool suite in Section Sequence Analysis Tools.
10th June 2020: Added Unicycler " an assembly pipeline for bacterial genomes" in Section Assembly.
11th May 2020: Added Snippy " Rapid haploid variant calling and core genome alignment" in Section Variant Calling.
4th March 2020: The reference databanks for FROGS affiliation tool have been updated, including silva v138 and unite v8.

What is Galaxy?

Galaxy is an open platform for supporting data intensive research. Galaxy is developed by The Galaxy Team with the support of many contributors.

Take an interactive tour: Galaxy UI History Scratchbook

Important note: the use of tools and banks available under Galaxy must be done in a way that respects intellectual property. Users must therefore be able to present a valid license, especially for non-academic users.

Use Migale Galaxy

You need to ask for an account to use the Migale Galaxy instance.

A 20 GB quota is granted to each user. To obtain a quota increase, you must request it via this form.

Documentation

A FAQ dedicated to the use of migale's Galaxy server is available here.

Contact us

For any questions about the use of the Migale Galaxy server, please send a mail at help-migale@inra.fr.

The request to integrate a new tool must be made via the dedicated form on the Migale facility website.

Citation

The services of the MIGALE facility are open and accessible, excluding private use, without financial compensation. In the event that some work using Migale resources (calculation, storage, human resources, etc.) leads to a scientific publication, we ask you in return to quote or thank the facility in the acknowledgements.

"We are grateful to the INRA MIGALE bioinformatics facility (MIGALE, INRA, 2018. Migale bioinformatics Facility, doi: 10.15454/1.5572390655343293E12) for providing providing help and support"

If you use, extend or reference Galaxy in your published work, please cite this publication: